Run the codes:

1. Unpack the distribution wherever you like. It will create a directory called NetP/.
2. Start Matlab.
3. Set your directory as  NetP/. that was created when the software was unpacked.
4. Important: Run the program with the following command lines in matlab,
	a. To test Rosetta dataset: type test_NetP_Rosetta 


Example:

>> test_NetP_Rosetta

set H
running BC_Microarray_Data
set H
running iteration until convergence...
running BC_Clinical
running iteration until convergence...
running BC_Combine
set H
running iteration until convergence...
      
      
===============================================================================
 Network Propagation
===============================================================================
     Microarray  |       Clinical        |      Hybrid         
===============================================================================
     ROC score   |       ROC score       |      ROC score  
===============================================================================
     0.83333     |        0.86905        |      0.84524    
================================================================================
      
>> 


Descriptions:

1. NetDiff.m: Network Propagation algorithm. 
2. BC_MC.m: Network Propagation algorithm using Breast Cancer Microarray data.
3. BC_Clinical.m: Network Propagation algorithm using Breast Cancer Clinical data.
4. BC_Combine.m: Network Propagation algorithm using Breast Cancer Microarray data + Clinical dadta.
5. Get_ROC.m: Calculating ROC scores.
6. Rosetta.mat: Rosetta dataset
	a. MC_data: Microarray gene expression data 
	b. Clinica_data: Clinical data 
	c. Index_231: Index of 231 important genes
	d. labels: Label information.

Note: 

We fix the training data and shuffle the test data, and then report ROC scores.
we also use fixed parameters for this demo.


*Disclaimer:
*This software is free only for non-commercial use. It must not be distributed without prior permission of the author. The author is not responsible for implications from the use of this software.