Song, Tianci, Eric Cosatto, Gaoyuan Wang, Rui Kuang, Mark Gerstein, Martin Renqiang Min, and Jonathan Warrell. 2024. “Predicting Spatially Resolved Gene Expression via Tissue Morphology Using Adaptive Spatial GNNs”. Bioinformatics 40 (Special Issue of The Proceedings of The 23rd European Conference on Computational Biology (ECCB). Oxford University Press: ii111-ii119.
Tianci Song
First name
Tianci
Last name
Song
Broadbent, Charles, Tianci Song, and Rui Kuang. 2024. “Deciphering High-Order Structures in Spatial Transcriptomes With Graph-Guided Tucker Decomposition”. Bioinformatics 40 (Special Issue of The Proceedings of The 32nd International Conference on Intelligent Systems for Molecular Biology (ISMB). Oxford University Press: i529-i538.
Song, Tianci, Quoc Nguyen, Charles Broadbent, and Rui Kuang. 2026. “CTFacTomo: Reconstructing 3D Spatial Structures of RNA Tomography Transcriptomes by Collapsed Tensor Factorization”. PLOS Computational Biology 22. Public Library of Science: e1013457.
Li, Zhuliu, Tianci Song, Jeongsik Yong, and Rui Kuang. 2021. “Imputation of Spatially-Resolved Transcriptomes by Graph-Regularized Tensor Completion”. PLoS Computational Biology 17. Public Library of Science San Francisco, CA USA: e1008218.
Song, Tianci, Charles Broadbent, and Rui Kuang. 2023. “GNTD: Reconstructing Spatial Transcriptomes With Graph-Guided Neural Tensor Decomposition Informed by Spatial and Functional Relations”. Nature Communications 14. Nature Publishing Group UK London: 8276.
Song, Ying, Tianci Song, and Rui Kuang. 2019. “Path Segmentation for Movement Trajectories With Irregular Sampling Frequency Using Space-Time Interpolation and Density-Based Spatial Clustering”. Transactions in GIS 23. Wiley Online Library: 558-78.
Song, Tianci, Kathleen K Markham, Zhuliu Li, Kristen E Muller, Kathleen Greenham, and Rui Kuang. 2022. “Detecting Spatially Co-Expressed Gene Clusters With Functional Coherence by Graph-Regularized Convolutional Neural Network”. Bioinformatics 38. Oxford University Press: 1344-52.
Petegrosso, Raphael, Tianci Song, and Rui Kuang. 2020. “Hierarchical Canonical Correlation Analysis Reveals Phenotype, Genotype, and Geoclimate Associations in Plants”. Plant Phenomics. AAAS.