Song, Tianci, Eric Cosatto, Gaoyuan Wang, Rui Kuang, Mark Gerstein, Martin Renqiang Min, and Jonathan Warrell. 2024. “Predicting Spatially Resolved Gene Expression via Tissue Morphology Using Adaptive Spatial GNNs”. Bioinformatics 40 (Special Issue of The Proceedings of The 23rd European Conference on Computational Biology (ECCB). Oxford University Press: ii111-ii119.
Rui Kuang
First name
Rui
Last name
Kuang
Broadbent, Charles, Tianci Song, and Rui Kuang. 2024. “Deciphering High-Order Structures in Spatial Transcriptomes With Graph-Guided Tucker Decomposition”. Bioinformatics 40 (Special Issue of The Proceedings of The 32nd International Conference on Intelligent Systems for Molecular Biology (ISMB). Oxford University Press: i529-i538.
Song, Tianci, Quoc Nguyen, Charles Broadbent, and Rui Kuang. 2026. “CTFacTomo: Reconstructing 3D Spatial Structures of RNA Tomography Transcriptomes by Collapsed Tensor Factorization”. PLOS Computational Biology 22. Public Library of Science: e1013457.
Fang, Gang, Rui Kuang, Gaurav Pandey, Michael Steinbach, Chad L Myers, and Vipin Kumar. 2010. “Subspace Differential Coexpression Analysis: Problem Definition and a General Approach”. In Biocomputing 2010, 145-56. World Scientific.
Kuang, Rui, Christina S Leslie, and An-Suei Yang. 2004. “Protein Backbone Angle Prediction With Machine Learning Approaches”. Bioinformatics 20. Oxford University Press: 1612-21.
Petegrosso, Raphael, Sunho Park, Tae Hyun Hwang, and Rui Kuang. 2017. “Transfer Learning across Ontologies for Phenome-Genome Association Prediction”. Bioinformatics 33. Oxford University Press: 529-36.
Chang, Jae-Woong, Hsin-Sung Yeh, Meeyeon Park, Luke Erber, Jiao Sun, Sze Cheng, Alexander M Bui, et al. 2019. “MTOR-Regulated U2af1 Tandem Exon Splicing Specifies Transcriptome Features for Translational Control”. Nucleic Acids Research 47. Oxford University Press: 10373-87.
Weston, Jason, Rui Kuang, Christina Leslie, and William Stafford Noble. 2006. “Protein Ranking by Semi-Supervised Network Propagation”. In BMC Bioinformatics, 7:1-9. Springer.
Zhang, Wei, Takayo Ota, Viji Shridhar, Jeremy Chien, Baolin Wu, and Rui Kuang. 2013. “Network-Based Survival Analysis Reveals Subnetwork Signatures for Predicting Outcomes of Ovarian Cancer Treatment”. PLoS Computational Biology 9. Public Library of Science San Francisco, USA: e1002975.
Song, Tianci, Charles Broadbent, and Rui Kuang. 2023. “GNTD: Reconstructing Spatial Transcriptomes With Graph-Guided Neural Tensor Decomposition Informed by Spatial and Functional Relations”. Nature Communications 14. Nature Publishing Group UK London: 8276.