Kuang, Rui, Christina S Leslie, and An-Suei Yang. 2004. “Protein Backbone Angle Prediction With Machine Learning Approaches”. Bioinformatics 20. Oxford University Press: 1612-21.
Protein Remote Homology
Weston, Jason, Rui Kuang, Christina Leslie, and William Stafford Noble. 2006. “Protein Ranking by Semi-Supervised Network Propagation”. In BMC Bioinformatics, 7:1-9. Springer.
Kuang, Rui, Jason Weston, William Stafford Noble, and Christina Leslie. 2005. “Motif-Based Protein Ranking by Network Propagation”. Bioinformatics 21. Oxford University Press: 3711-18.
Kuang, Rui, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, and Christina Leslie. 2005. “Profile-Based String Kernels for Remote Homology Detection and Motif Extraction”. Journal of Bioinformatics and Computational Biology 3. World Scientific: 527-50.
Leslie, Christina, Rui Kuang, and Eleazar Eskin. 2004. “Inexact Matching String Kernels for Protein Classification”. Kernel Methods in Computational Biology. MIT Press, Cambridge, MA, 95-112.
Min, Renqiang, Rui Kuang, Anthony Bonner, and Zhaolei Zhang. 2009. “Learning Random-Walk Kernels for Protein Remote Homology Identification and Motif Discovery”. In Proceedings of the 2009 SIAM International Conference on Data Mining, 133-44. SIAM.
Melvin, Iain, Eugene Ie, Rui Kuang, Jason Weston, William Stafford Noble, and Christina Leslie. 2007. “SVM-Fold: A Tool for Discriminative Multi-Class Protein Fold and Superfamily Recognition”. In BMC Bioinformatics, 8:1-15. Springer.
Petegrosso, Raphael, Zhuliu Li, Molly A Srour, Yousef Saad, Wei Zhang, and Rui Kuang. 2019. “Scalable Remote Homology Detection and Fold Recognition in Massive Protein Networks”. Proteins: Structure, Function, and Bioinformatics 87. Wiley Online Library: 478-91.
Leslie, Christina, and Rui Kuang. 2004. “Fast String Kernels Using Inexact Matching for Protein Sequences”. Journal of Machine Learning Research 5: 1435-55.
Noble, William S, Rui Kuang, Christina Leslie, and Jason Weston. 2005. “Identifying Remote Protein Homologs by Network Propagation”. The FEBS Journal 272. Wiley Online Library: 5119-28.