Tian, Ze, Taehyun Hwang, and Rui Kuang. 2009. “A Hypergraph-Based Learning Algorithm for Classifying Arraycgh Data With Spatial Prior”. In 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 1-4. IEEE.
Laplacian Graph-based Models
Hwang, Taehyun, Gowtham Atluri, Maoqiang Xie, Sanjoy Dey, Changjin Hong, Vipin Kumar, and Rui Kuang. 2012. “Co-Clustering Phenome-Genome for Phenotype Classification and Disease Gene Discovery”. Nucleic Acids Research 40. Oxford University Press: e146—e146.
Hwang, Tae Hyun, Gowtham Atluri, Rui Kuang, Vipin Kumar, Timothy Starr, Kevin AT Silverstein, Peter M Haverty, Zemin Zhang, and Jinfeng Liu. 2013. “Large-Scale Integrative Network-Based Analysis Identifies Common Pathways Disrupted by Copy Number Alterations across Cancers”. BMC Genomics 14. Springer: 1-13.
Xie, Maoqiang, Taehyun Hwang, and Rui Kuang. 2012. “Prioritizing Disease Genes by Bi-Random Walk”. In Advances in Knowledge Discovery and Data Mining: 16th Pacific-Asia Conference, PAKDD 2012, Kuala Lumpur, Malaysia, May 29&Mdash;June 1, 2012, Proceedings, Part II 16, 292-303. Springer.
Zhang, Wei, Baryun Hwang, Baolin Wu, and Rui Kuang. 2010. “Network Propagation Models for Gene Selection”. In 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 1-4. IEEE.
Song, Tianci, Kathleen K Markham, Zhuliu Li, Kristen E Muller, Kathleen Greenham, and Rui Kuang. 2022. “Detecting Spatially Co-Expressed Gene Clusters With Functional Coherence by Graph-Regularized Convolutional Neural Network”. Bioinformatics 38. Oxford University Press: 1344-52.
Hwang, Taehyun, and Rui Kuang. 2010. “A Heterogeneous Label Propagation Algorithm for Disease Gene Discovery”. In Proceedings of the 2010 SIAM International Conference on Data Mining, 583-94. SIAM.
Hwang, Taehyun, Ze Tian, Rui Kuangy, and Jean-Pierre Kocher. 2008. “Learning on Weighted Hypergraphs to Integrate Protein Interactions and Gene Expressions for Cancer Outcome Prediction”. In 2008 Eighth IEEE International Conference on Data Mining, 293-302. IEEE.