Chien, Jeremy, Rui Kuang, Charles Landen, and Viji Shridhar. 2013. “Platinum-Sensitive Recurrence in Ovarian Cancer: The Role of Tumor Microenvironment”. Frontiers in Oncology 3. Frontiers Media SA: 251.
Cancer Genomics
Tian, Ze, and Rui Kuang. 2010. “Integrative Classification and Analysis of Multiple ArrayCGH Datasets With Probe Alignment”. Bioinformatics 26. Oxford University Press: 2313-20.
Zhang, Wei, Jeremy Chien, Jeongsik Yong, and Rui Kuang. 2017. “Network-Based Machine Learning and Graph Theory Algorithms for Precision Oncology”. NPJ Precision Oncology 1. Nature Publishing Group UK London: 25.
Tian, Ze, Taehyun Hwang, and Rui Kuang. 2009. “A Hypergraph-Based Learning Algorithm for Classifying Gene Expression and ArrayCGH Data With Prior Knowledge”. Bioinformatics 25. Oxford University Press: 2831-38.
Hwang, Taehyun, Hugues Sicotte, Ze Tian, Baolin Wu, Jean-Pierre Kocher, Dennis A Wigle, Vipin Kumar, and Rui Kuang. 2008. “Robust and Efficient Identification of Biomarkers by Classifying Features on Graphs”. Bioinformatics 24. Oxford University Press: 2023-29.
Zhang, Wei, Takayo Ota, Viji Shridhar, Jeremy Chien, Baolin Wu, and Rui Kuang. 2013. “Network-Based Survival Analysis Reveals Subnetwork Signatures for Predicting Outcomes of Ovarian Cancer Treatment”. PLoS Computational Biology 9. Public Library of Science San Francisco, USA: e1002975.
Chien, Jeremy, Hugues Sicotte, Jian-Bing Fan, Sean Humphray, Julie M Cunningham, Kimberly R Kalli, Ann L Oberg, et al. 2015. “TP53 Mutations, Tetraploidy and Homologous Recombination Repair Defects in Early Stage High-Grade Serous Ovarian Cancer”. Nucleic Acids Research 43. Oxford University Press: 6945-58.
Tian, Ze, Huanan Zhang, and Rui Kuang. 2012. “Sparse Group Selection on Fused Lasso Components for Identifying Group-Specific DNA Copy Number Variations”. In 2012 IEEE 12th International Conference on Data Mining, 665-74. IEEE.
Zhang, Wei, Nicholas Johnson, Baolin Wu, and Rui Kuang. 2012. “Signed Network Propagation for Detecting Differential Gene Expressions and DNA Copy Number Variations”. In Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine, 337-44.
Johnson, Nicholas, Gang Fang, and Rui Kuang. 2012. “Approximate Subspace Pattern Mining for Mapping Copy-Number Variations”. In Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine, 616-16.