Song, Tianci, Eric Cosatto, Gaoyuan Wang, Rui Kuang, Mark Gerstein, Martin Renqiang Min, and Jonathan Warrell. 2024. “Predicting Spatially Resolved Gene Expression via Tissue Morphology Using Adaptive Spatial GNNs”. Bioinformatics 40 (Special Issue of The Proceedings of The 23rd European Conference on Computational Biology (ECCB). Oxford University Press: ii111-ii119.
Graph Neural Networks
Song, Tianci, Charles Broadbent, and Rui Kuang. 2023. “GNTD: Reconstructing Spatial Transcriptomes With Graph-Guided Neural Tensor Decomposition Informed by Spatial and Functional Relations”. Nature Communications 14. Nature Publishing Group UK London: 8276.
Song, Tianci, Kathleen K Markham, Zhuliu Li, Kristen E Muller, Kathleen Greenham, and Rui Kuang. 2022. “Detecting Spatially Co-Expressed Gene Clusters With Functional Coherence by Graph-Regularized Convolutional Neural Network”. Bioinformatics 38. Oxford University Press: 1344-52.